Serveur d'exploration Cyberinfrastructure

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Applications of the ACGT Master Ontology on Cancer

Identifieur interne : 000E66 ( Main/Exploration ); précédent : 000E65; suivant : 000E67

Applications of the ACGT Master Ontology on Cancer

Auteurs : Mathias Brochhausen [Allemagne] ; Gabriele Weiler [Allemagne] ; Luis Martín [Espagne] ; Cristian Cocos [Allemagne] ; Holger Stenzhorn [Allemagne] ; Norbert Graf [Allemagne] ; Martin Dörr [Grèce] ; Manolis Tsiknakis [Grèce] ; Barry Smith [Allemagne, États-Unis]

Source :

RBID : ISTEX:3B9AFCB5939C5483B1DFD83F91F263887D2924B4

Abstract

Abstract: In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far.

Url:
DOI: 10.1007/978-3-540-88875-8_132


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Applications of the ACGT Master Ontology on Cancer</title>
<author>
<name sortKey="Brochhausen, Mathias" sort="Brochhausen, Mathias" uniqKey="Brochhausen M" first="Mathias" last="Brochhausen">Mathias Brochhausen</name>
</author>
<author>
<name sortKey="Weiler, Gabriele" sort="Weiler, Gabriele" uniqKey="Weiler G" first="Gabriele" last="Weiler">Gabriele Weiler</name>
</author>
<author>
<name sortKey="Martin, Luis" sort="Martin, Luis" uniqKey="Martin L" first="Luis" last="Martín">Luis Martín</name>
</author>
<author>
<name sortKey="Cocos, Cristian" sort="Cocos, Cristian" uniqKey="Cocos C" first="Cristian" last="Cocos">Cristian Cocos</name>
</author>
<author>
<name sortKey="Stenzhorn, Holger" sort="Stenzhorn, Holger" uniqKey="Stenzhorn H" first="Holger" last="Stenzhorn">Holger Stenzhorn</name>
</author>
<author>
<name sortKey="Graf, Norbert" sort="Graf, Norbert" uniqKey="Graf N" first="Norbert" last="Graf">Norbert Graf</name>
</author>
<author>
<name sortKey="Dorr, Martin" sort="Dorr, Martin" uniqKey="Dorr M" first="Martin" last="Dörr">Martin Dörr</name>
</author>
<author>
<name sortKey="Tsiknakis, Manolis" sort="Tsiknakis, Manolis" uniqKey="Tsiknakis M" first="Manolis" last="Tsiknakis">Manolis Tsiknakis</name>
</author>
<author>
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:3B9AFCB5939C5483B1DFD83F91F263887D2924B4</idno>
<date when="2008" year="2008">2008</date>
<idno type="doi">10.1007/978-3-540-88875-8_132</idno>
<idno type="url">https://api.istex.fr/document/3B9AFCB5939C5483B1DFD83F91F263887D2924B4/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000382</idno>
<idno type="wicri:Area/Istex/Curation">000382</idno>
<idno type="wicri:Area/Istex/Checkpoint">000557</idno>
<idno type="wicri:doubleKey">0302-9743:2008:Brochhausen M:applications:of:the</idno>
<idno type="wicri:Area/Main/Merge">000E73</idno>
<idno type="wicri:Area/Main/Curation">000E66</idno>
<idno type="wicri:Area/Main/Exploration">000E66</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a" type="main" xml:lang="en">Applications of the ACGT Master Ontology on Cancer</title>
<author>
<name sortKey="Brochhausen, Mathias" sort="Brochhausen, Mathias" uniqKey="Brochhausen M" first="Mathias" last="Brochhausen">Mathias Brochhausen</name>
<affiliation wicri:level="3">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>IFOMIS, Saarland University, P.O.15 11 50, 66041, Saarbrücken</wicri:regionArea>
<placeName>
<region type="land" nuts="2">Sarre (Land)</region>
<settlement type="city">Sarrebruck</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<country wicri:rule="url">Allemagne</country>
</affiliation>
</author>
<author>
<name sortKey="Weiler, Gabriele" sort="Weiler, Gabriele" uniqKey="Weiler G" first="Gabriele" last="Weiler">Gabriele Weiler</name>
<affiliation wicri:level="1">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Fraunhofer Institute for Biomedical Engineering, St. Ingbert</wicri:regionArea>
<wicri:noRegion>St. Ingbert</wicri:noRegion>
<wicri:noRegion>St. Ingbert</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Martin, Luis" sort="Martin, Luis" uniqKey="Martin L" first="Luis" last="Martín">Luis Martín</name>
<affiliation wicri:level="3">
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Biomedical Informatics Group, Artificial Intelligence Laboratory, School of Computer Science, Universidad Politécnica de Madrid, Madrid</wicri:regionArea>
<placeName>
<settlement type="city">Madrid</settlement>
<region nuts="2" type="region">Communauté de Madrid</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Cocos, Cristian" sort="Cocos, Cristian" uniqKey="Cocos C" first="Cristian" last="Cocos">Cristian Cocos</name>
<affiliation wicri:level="3">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>IFOMIS, Saarland University, P.O.15 11 50, 66041, Saarbrücken</wicri:regionArea>
<placeName>
<region type="land" nuts="2">Sarre (Land)</region>
<settlement type="city">Sarrebruck</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Stenzhorn, Holger" sort="Stenzhorn, Holger" uniqKey="Stenzhorn H" first="Holger" last="Stenzhorn">Holger Stenzhorn</name>
<affiliation wicri:level="3">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Medical Biometry and Medical Informatics, University Medical Center, Freiburg</wicri:regionArea>
<placeName>
<region type="land" nuts="1">Bade-Wurtemberg</region>
<region type="district" nuts="2">District de Fribourg-en-Brisgau</region>
<settlement type="city">Fribourg-en-Brisgau</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Graf, Norbert" sort="Graf, Norbert" uniqKey="Graf N" first="Norbert" last="Graf">Norbert Graf</name>
<affiliation wicri:level="1">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Paediatric Haematology and Oncology, Saarland University Hospital, Homburg</wicri:regionArea>
<wicri:noRegion>Homburg</wicri:noRegion>
<wicri:noRegion>Homburg</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Dorr, Martin" sort="Dorr, Martin" uniqKey="Dorr M" first="Martin" last="Dörr">Martin Dörr</name>
<affiliation wicri:level="1">
<country xml:lang="fr">Grèce</country>
<wicri:regionArea>Institute of Computer Science, Foundation for Research and Technology-Hellas (FORTH), Heraklion</wicri:regionArea>
<wicri:noRegion>Heraklion</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Tsiknakis, Manolis" sort="Tsiknakis, Manolis" uniqKey="Tsiknakis M" first="Manolis" last="Tsiknakis">Manolis Tsiknakis</name>
<affiliation wicri:level="1">
<country xml:lang="fr">Grèce</country>
<wicri:regionArea>Institute of Computer Science, Foundation for Research and Technology-Hellas (FORTH), Heraklion</wicri:regionArea>
<wicri:noRegion>Heraklion</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<affiliation wicri:level="3">
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>IFOMIS, Saarland University, P.O.15 11 50, 66041, Saarbrücken</wicri:regionArea>
<placeName>
<region type="land" nuts="2">Sarre (Land)</region>
<settlement type="city">Sarrebruck</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="4">
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo</wicri:regionArea>
<placeName>
<settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<orgName type="institution">Université d'État de New York</orgName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="s">Lecture Notes in Computer Science</title>
<imprint>
<date>2008</date>
</imprint>
<idno type="ISSN">0302-9743</idno>
<idno type="eISSN">1611-3349</idno>
<idno type="ISSN">0302-9743</idno>
</series>
<idno type="istex">3B9AFCB5939C5483B1DFD83F91F263887D2924B4</idno>
<idno type="DOI">10.1007/978-3-540-88875-8_132</idno>
<idno type="ChapterID">132</idno>
<idno type="ChapterID">Chap132</idno>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">0302-9743</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass></textClass>
<langUsage>
<language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Abstract: In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Allemagne</li>
<li>Espagne</li>
<li>Grèce</li>
<li>États-Unis</li>
</country>
<region>
<li>Bade-Wurtemberg</li>
<li>Communauté de Madrid</li>
<li>District de Fribourg-en-Brisgau</li>
<li>Sarre (Land)</li>
<li>État de New York</li>
</region>
<settlement>
<li>Buffalo (New York)</li>
<li>Fribourg-en-Brisgau</li>
<li>Madrid</li>
<li>Sarrebruck</li>
</settlement>
<orgName>
<li>Université d'État de New York</li>
<li>Université d'État de New York à Buffalo</li>
</orgName>
</list>
<tree>
<country name="Allemagne">
<region name="Sarre (Land)">
<name sortKey="Brochhausen, Mathias" sort="Brochhausen, Mathias" uniqKey="Brochhausen M" first="Mathias" last="Brochhausen">Mathias Brochhausen</name>
</region>
<name sortKey="Brochhausen, Mathias" sort="Brochhausen, Mathias" uniqKey="Brochhausen M" first="Mathias" last="Brochhausen">Mathias Brochhausen</name>
<name sortKey="Cocos, Cristian" sort="Cocos, Cristian" uniqKey="Cocos C" first="Cristian" last="Cocos">Cristian Cocos</name>
<name sortKey="Graf, Norbert" sort="Graf, Norbert" uniqKey="Graf N" first="Norbert" last="Graf">Norbert Graf</name>
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<name sortKey="Stenzhorn, Holger" sort="Stenzhorn, Holger" uniqKey="Stenzhorn H" first="Holger" last="Stenzhorn">Holger Stenzhorn</name>
<name sortKey="Weiler, Gabriele" sort="Weiler, Gabriele" uniqKey="Weiler G" first="Gabriele" last="Weiler">Gabriele Weiler</name>
</country>
<country name="Espagne">
<region name="Communauté de Madrid">
<name sortKey="Martin, Luis" sort="Martin, Luis" uniqKey="Martin L" first="Luis" last="Martín">Luis Martín</name>
</region>
</country>
<country name="Grèce">
<noRegion>
<name sortKey="Dorr, Martin" sort="Dorr, Martin" uniqKey="Dorr M" first="Martin" last="Dörr">Martin Dörr</name>
</noRegion>
<name sortKey="Tsiknakis, Manolis" sort="Tsiknakis, Manolis" uniqKey="Tsiknakis M" first="Manolis" last="Tsiknakis">Manolis Tsiknakis</name>
</country>
<country name="États-Unis">
<region name="État de New York">
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E66 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000E66 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:3B9AFCB5939C5483B1DFD83F91F263887D2924B4
   |texte=   Applications of the ACGT Master Ontology on Cancer
}}

Wicri

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024